Index

_

__call__() (clinvar_build.utils.config_tools.BlockConfigParser method) __eq__() (clinvar_build.utils.config_tools.BlockConfigParser method) __get__() (clinvar_build.utils.config_tools.ManagedProperty method) __init__() (clinvar_build.schema_generator.ClinVarSchemaGenerator method) (clinvar_build.utils.config_tools.BlockConfigParser method) (clinvar_build.utils.config_tools.ManagedProperty method) (clinvar_build.utils.parser_tools.SQLiteParser method) (clinvar_build.utils.parser_tools.ViewXML method) __repr__() (clinvar_build.schema_generator.ClinVarSchemaGenerator method) (clinvar_build.utils.config_tools.BlockConfigParser method) (clinvar_build.utils.parser_tools.SQLiteParser method) (clinvar_build.utils.parser_tools.ViewXML method)

__set__() (clinvar_build.utils.config_tools.ManagedProperty method) __str__() (clinvar_build.schema_generator.ClinVarSchemaGenerator method) (clinvar_build.utils.config_tools.BlockConfigParser method) (clinvar_build.utils.parser_tools.SQLiteParser method) (clinvar_build.utils.parser_tools.ViewXML method) __weakref__ (clinvar_build.schema_generator.ClinVarSchemaGenerator attribute) _last_line_count (clinvar_build.utils.config_tools.ProgressHandler attribute) _SQL_COLS_PATTERN (clinvar_build.parser.ClinVarParser attribute)

A

assign_empty_default() (in module clinvar_build.utils.general)

B

BlockConfigParser (class in clinvar_build.utils.config_tools)

C

check_environ() (in module clinvar_build.utils.config_tools) clinvar_build.parser module clinvar_build.schema_generator module clinvar_build.utils.config_tools module clinvar_build.utils.general module clinvar_build.utils.parser_tools module ClinVarParser (class in clinvar_build.parser)

ClinVarSchemaGenerator (class in clinvar_build.schema_generator) config (clinvar_build.utils.parser_tools.SQLiteParser attribute) configure_logging() (in module clinvar_build.utils.parser_tools) conn (clinvar_build.parser.ClinVarParser attribute) (clinvar_build.schema_generator.ClinVarSchemaGenerator attribute) (clinvar_build.utils.parser_tools.SQLiteParser attribute) count_all_tags() (clinvar_build.utils.parser_tools.ViewXML method), [1] count_duplicates() (clinvar_build.utils.parser_tools.SQLiteParser method) create_schema() (clinvar_build.schema_generator.ClinVarSchemaGenerator method), [1] cursor (clinvar_build.parser.ClinVarParser attribute) (clinvar_build.schema_generator.ClinVarSchemaGenerator attribute) (clinvar_build.utils.parser_tools.SQLiteParser attribute)

D

disable_setter() (clinvar_build.utils.config_tools.ManagedProperty method), [1]

E

element (clinvar_build.utils.parser_tools.ViewXML attribute)

emit() (clinvar_build.utils.config_tools.ProgressHandler method) enable_setter() (clinvar_build.utils.config_tools.ManagedProperty method), [1]

F

find_all_paths() (clinvar_build.utils.parser_tools.ViewXML method), [1]

I

index (clinvar_build.utils.parser_tools.ViewXML attribute)

M

main() (in module clinvar_build.parser) (in module clinvar_build.schema_generator) ManagedProperty (class in clinvar_build.utils.config_tools) module clinvar_build.parser clinvar_build.schema_generator clinvar_build.utils.config_tools clinvar_build.utils.general clinvar_build.utils.parser_tools

O

open_xml_file() (in module clinvar_build.utils.parser_tools)

P

parse_arguments() (in module clinvar_build.parser) (in module clinvar_build.schema_generator)

parse_file() (clinvar_build.parser.ClinVarParser method) parsed_data (clinvar_build.utils.config_tools.BlockConfigParser attribute) ProgressHandler (class in clinvar_build.utils.config_tools)

R

reset() (clinvar_build.utils.config_tools.ProgressHandler method)

S

set_with_setter() (clinvar_build.utils.config_tools.ManagedProperty method), [1] show_children() (clinvar_build.utils.parser_tools.ViewXML method), [1] show_tree() (clinvar_build.utils.parser_tools.ViewXML method), [1]

SQLiteParser (class in clinvar_build.utils.parser_tools) stats (clinvar_build.parser.ClinVarParser attribute) (clinvar_build.utils.parser_tools.SQLiteParser attribute)

T

tag_name (clinvar_build.utils.parser_tools.ViewXML attribute)

trace() (in module clinvar_build.utils.parser_tools)

V

validate_database() (clinvar_build.utils.parser_tools.SQLiteParser method)

validate_xml() (in module clinvar_build.utils.parser_tools) ViewXML (class in clinvar_build.utils.parser_tools)

X

xml_path (clinvar_build.utils.parser_tools.ViewXML attribute)